Journal: Molecular Neurodegeneration
Article Title: Alzheimer’s disease associated isoforms of human CD33 distinctively modulate microglial cell responses in 5XFAD mice
doi: 10.1186/s13024-024-00734-8
Figure Lengend Snippet: Single-cell RNA sequencing reveals Ccl3 and Trem2 DAM enriched in the CD33m genotype. a Unsupervised and iterative machine-learning based clustering of 15,200 microglia ( Hexb + Fcrls + Tmem119 + Sall1 + ) and BAM ( Ms4a7 + Mrc1 + Lyve1 + Timd4 + ) collected from 5XFAD control, CD33M 5XFAD, CD33m 5XFAD, and control non-5XFAD mice. Microglia from three homeostatic (HM1-3), two transitioning (TM1-2), two RNA binding protein (RBM1-2) subpopulations along with the disease-enriched interferon responsive (IRM), myelin transcript enriched (MTEM), and disease associated (DAM) clusters. b-e UMAPs of individual samples showing ( b ) 5XFAD control, c CD33m 5XFAD, d CD33M 5XFAD, and e control non-5xFAD. f , g Separation of each cluster by ( f ) proportion of cells and ( g ) absolute number of cells belonging to each genotype. DAM, specifically Trem2 DAM, are enriched in the CD33m group and reduced in the CD33M group. h Differential gene expression per cluster used to define microglial subpopulations. HM are characterized by homeostatic genes ( P2ry12, Tmem119 ), RBM by genes related to RNA binding ( Son, Fus ), TM by a combination of homeostatic ( P2ry12, Tmem119 ), complement ( C1qa, C1qb ), and proliferative ( MKi-67, Top2a ) genes. DAM are defined by Clec7a and Apoe expression and further delineated by expression of Ccl3 and Trem2 . i UMAP showing enriched Nes expression within the Ccl3 DAM cluster. j-l Violin plots showing the upregulation of ( j ) Nes , k Jun , and l Fos in the CD33m + 5XFAD group relative to 5XFAD control and CD33M + 5XFAD
Article Snippet: ApoE levels were quantified in both the soluble and insoluble fractions using a Mouse Apolipoprotein E (APOE) ELISA Kit (Mybiosource).
Techniques: RNA Sequencing, Control, RNA Binding Assay, Gene Expression, Expressing